Entity

Get entity information.

opal entity <ID> <CREDENTIALS> [EXTRAS]

Arguments

Argument

Description

ID

Entity identifier.

Options

Option

Description

--type TYPE, -ty TYPE

Type of the entity (e.g. Participant, Instrument, Drug). Default type is Participant.

--tables, -ta

To get the list of tables in which the entity with given id exists.

Credentials

Authentication can be done by username/password credentials OR by personal access token OR by certificate/private key pair (two-way SSL authentication).

Option

Description

--opal OPAL, -o OPAL

Opal server base url

--user USER, -u USER

Credentials auth: user name (requires a password)

--password PASSWORD, -p PASSWORD

Credentials auth: user password (requires a user name)

--token TOKEN, -tk TOKEN

Token auth: user’s personal access token

--ssl-cert SSL_CERT, -sc SSL_CERT

Two-way SSL auth: certificate/public key file (requires a private key)

--ssl-key SSL_KEY, -sk SSL_KEY

Two-way SSL auth: private key file (requires a certificate)

Extras

Option

Description

-h, --help

Show the command help’s message.

--verbose, -v

Verbose output.

--json, -j

Output pretty-print JSON

Example

Fetch the entities with id 1444:

opal entity 1444 --opal https://opal-demo.obiba.org --user administrator --password password

Fetch the list of table where entity 1444 exists:

opal entity 1444 --opal https://opal-demo.obiba.org --user administrator --password password --tables

Fetch the list of table where entity 1444 of type “Participant” exists:

opal entity 1444 --opal https://opal-demo.obiba.org --user administrator --password password --tables --type Participant