OBiBa Opal Documentation

Targeted at individual studies and study consortia, OBiBa software stack (Opal, Mica etc.) provides a software solution for epidemiological data management, analysis and publication. Opal is the core data warehouse application that provides all the necessary tools to import, transform and describe data. Opal can be used with Agate, the OBiBa’s central authentication server.

• Introduction
  • Variables and Data
  • Identifiers Mappings
  • Data Harmonization
  • Resources

Administrator Guide

• Installation
• Configuration
• Plugins
• R Server

Cookbook

• Cookbook Introduction
• Importing Data
• R/DataSHIELD

Web User Guide

• Web Introduction
• Projects
• Search
• Administration
• My Profile
• Permissions

R DataSHIELD User Guide

• R DataSHIELD Introduction
• Using R
• Using DataSHIELD

Python User Guide

• Python Introduction
• Python API
• Python Commands

Magma Javascript API

• Magma JS Introduction
• Magma JS Methods

Partners and Funders

The development of this application was made possible thanks to the support of our partners and funders:

Support

Please visit OBiBa support page.